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This is the second diagnostic plot (estimated conversions) generated by GRAND3.

Usage

PlotConversionFreq(data, category, sample = NULL, max.columns = 120)

Arguments

data

the grandR object

category

show a specific category (see GetDiagnosticParameters); cannot be NULL

sample

compare subreads for a specific sample; can be NULL, then compare all samples per subread

max.columns

if there are more columns (samples for bulk, cells for single cell) than this, show boxplots instead of points

Value

a list with a ggplot object, a description, and the desired size for the plot

Details

Show the percentage of all conversion types for all samples. In contrast to mismatches (see PlotMismatchPositionForSample and PlotMismatchPositionForType), the correct strand is already inferred for conversions, i.e. conversions refer to actual conversion events on RNA, whereas mismatches are observed events in mapped reads.