Many of the diagnostics functions expect (optional or mandatory) parameters that are described by this function
Value
a list with
orientation: Sense or Antisense, only relevant to mismatches for strand unspecific data
category: all available categories (Exonic/Intronic, genomes). Note that this might differ from what is available from GeneInfo(data,"Category"), since Grand3 might not have estimated NTRs for all categories!
label: which nucleoside analogs have been used
model: which model (binom or tbbinom) to inspect
estimator: which estimator (joint or separate NTRs were estimated for subreads)