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Plot gene values as bars

Source: R/plot.R
PlotGeneGroupsBars.Rd

Plot old and new RNA of a gene in a row.

Usage

PlotGeneGroupsBars(
  data,
  gene,
  slot = DefaultSlot(data),
  columns = NULL,
  show.CI = FALSE,
  xlab = NULL,
  transform = NULL
)

Arguments

data

the grandR object to get the data to be plotted from

gene

the gene to plot

slot

the slot of the grandR object to get the data from

columns

which columns (i.e. samples or cells) to show (see details)

show.CI

show confidence intervals; one of TRUE/FALSE (default: FALSE)

xlab

The names to show at the x axis;

transform

function that is called on the data frame directly before plotting (can be NULL)

Value

a ggplot object.

Details

xlab can be given as a character vector or an expression that evaluates into a character vector. The expression is evaluated in an environment having the Coldata, i.e. you can use names of Coldata as variables to conveniently it.

Columns can be given as a logical, integer or character vector representing a selection of the columns (samples or cells). The expression is evaluated in an environment having the Coldata, i.e. you can use names of Coldata as variables to conveniently build a logical vector (e.g., columns=Condition=="x").

See also

GetData, PlotGeneTotalVsNtr,PlotGeneOldVsNew,PlotGeneGroupsBars