Plot average expression vs. log2 fold changes
Arguments
- data
the grandR object that contains the data to be plotted
- analysis
the analysis to plot (default: first analysis)
- aest
parameter to set visual attributes of the plot
- p.cutoff
p-value cutoff (default: 0.05)
- lfc.cutoff
log fold change cutoff (default: 1)
- label.numbers
if TRUE, label the number of genes
- highlight
highlight these genes; can be either numeric indices, gene names, gene symbols or a logical vector (see details)
- label
label these genes; can be either numeric indices, gene names, gene symbols or a logical vector (see details)
- label.repel
force to repel labels from points and each other (increase if labels overlap)