Compute the total expression for a particular set of genes.
Usage
ComputeTotalExpression(
data,
name,
genes = Genes(data),
mode.slot = DefaultSlot(data)
)Arguments
- data
the grandR object
- name
the new name by which this is added to the Coldata
- genes
define the set of genes to compute the percentage for
- mode.slot
which mode.slot to take the values for computing the percentage from
Details
Genes can be referred to by their names, symbols, row numbers in the gene table, or a logical vector referring to the gene table rows.
To refer to data slots, the mode.slot syntax can be used: Each name is either a data slot, or one of (new,old,total) followed by a dot followed by a slot. For new or old, the data slot value is multiplied by ntr or 1-ntr. This can be used e.g. to filter by new counts.